Phylogenetic placement of metagenomic reads using the minimum evolution principle
نویسندگان
چکیده
منابع مشابه
Clustering metagenomic reads using spaced k-mers
With the emergence of next-generation sequencing technologies, the classification of short reads in a metagenomic sample has become an important yet difficult task. Several tools attempt to tackle this problem with each having a strong point in certain situations. Herein, a novel method is proposed that has its strong point in processing short reads. It is based on two new concepts: utilizing m...
متن کاملOn the consistency of the minimum evolution principle of phylogenetic inference
The goal of phylogenetic inference is the reconstruction of the evolutionary history of various biological entities (taxa) such as genes, proteins, viruses or species. Phylogenetic inference is of major importance in computational biology and has numerous applications ranging from the study of biodiversity to sequence analysis. Given a matrix of pairwise distances between taxa, the minimum evol...
متن کاملOn the optimization principle in phylogenetic analysis and the minimum-evolution criterion.
This paper discusses the optimization principle in phylogenetic analysis, in the case of distance data. We argue that the use of this principle cannot be called into question, except for computing time reasons. We show that the minimum-evolution criterion is not perfectly suited for distance data estimated from sequences, and we present another approach, implemented in the BIONJ algorithm, whic...
متن کاملWell Placement Optimization Using Differential Evolution Algorithm
Determining the optimal location of wells with the aid of an automated search algorithm is a significant and difficult step in the reservoir development process. It is a computationally intensive task due to the large number of simulation runs required. Therefore,the key issue to such automatic optimization is development of algorithms that can find acceptable solutions with a minimum numbe...
متن کاملformation and evolution of regional organizations: the case study of the economic cooperation organization (eco)
abstract because of the many geopolitical, geo economical and geo strategically potentials and communicational capabilities of eco region, members can expand the convergence and the integration in base of this organization that have important impact on members development and expanding peace in international and regional level. based on quality analyzing of library findings and experts interv...
15 صفحه اولذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
ژورنال
عنوان ژورنال: BMC Genomics
سال: 2015
ISSN: 1471-2164
DOI: 10.1186/1471-2164-16-s1-s13